Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Genes Targeted by hsa-mir-548d-3p in COID Lung Bhattacharjee Cluster 2 Table contains all genes in the COID Lung Bhattacharjee cluster number 2. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-548d-3p 8648 NCOA1 nuclear receptor coactivator 1 [Source:HGNC Symbol;Acc:7668] zzz999 283349 RASSF3 Ras association (RalGDS/AF-6) domain family member 3 [Source:HGNC Symbol;Acc:14271] T 55627 SMPD4 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) [Source:HGNC Symbol;Acc:32949] zzz999 4204 MECP2 methyl CpG binding protein 2 (Rett syndrome) [Source:HGNC Symbol;Acc:6990] P T 10250 SRRM1 serine/arginine repetitive matrix 1 [Source:HGNC Symbol;Acc:16638] T 283537 SLC46A3 solute carrier family 46, member 3 [Source:HGNC Symbol;Acc:27501] zzz999 3054 HCFC1 host cell factor C1 (VP16-accessory protein) [Source:HGNC Symbol;Acc:4839] T 11215 AKAP11 A kinase (PRKA) anchor protein 11 [Source:HGNC Symbol;Acc:369] P T 10181 RBM5 RNA binding motif protein 5 [Source:HGNC Symbol;Acc:9902] zzz999 6297 SALL2 sal-like 2 (Drosophila) [Source:HGNC Symbol;Acc:10526] zzz999 6431 SRSF6 serine/arginine-rich splicing factor 6 [Source:HGNC Symbol;Acc:10788] P T 1760 DMPK dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:2933] zzz999 134728 IRAK1BP1 interleukin-1 receptor-associated kinase 1 binding protein 1 [Source:HGNC Symbol;Acc:17368] zzz999 5501 PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme [Source:HGNC Symbol;Acc:9283] P T 51747 LUC7L3 LUC7-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:24309] P T 9112 MTA1 metastasis associated 1 [Source:HGNC Symbol;Acc:7410] T 4670 HNRNPM heterogeneous nuclear ribonucleoprotein M [Source:HGNC Symbol;Acc:5046] zzz999 3189 HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) [Source:HGNC Symbol;Acc:5043] zzz999 3177 SLC29A2 solute carrier family 29 (nucleoside transporters), member 2 [Source:HGNC Symbol;Acc:11004] zzz999 64061 TSPYL2 TSPY-like 2 [Source:HGNC Symbol;Acc:24358] zzz999 23360 FNBP4 formin binding protein 4 [Source:HGNC Symbol;Acc:19752] T 1362 CPD carboxypeptidase D [Source:HGNC Symbol;Acc:2301] T 84364 ARFGAP2 ADP-ribosylation factor GTPase activating protein 2 [Source:HGNC Symbol;Acc:13504] zzz999 8971 H1FX H1 histone family, member X [Source:HGNC Symbol;Acc:4722] P T 23309 SIN3B SIN3 homolog B, transcription regulator (yeast) [Source:HGNC Symbol;Acc:19354] zzz999 11188 NISCH nischarin [Source:HGNC Symbol;Acc:18006] zzz999 1974 EIF4A2 eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:3284] zzz999 8912 CACNA1H calcium channel, voltage-dependent, T type, alpha 1H subunit [Source:HGNC Symbol;Acc:1395] zzz999 1975 EIF4B eukaryotic translation initiation factor 4B [Source:HGNC Symbol;Acc:3285] P T 5310 PKD1 polycystic kidney disease 1 (autosomal dominant) [Source:HGNC Symbol;Acc:9008] zzz999 3184 HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) [Source:HGNC Symbol;Acc:5036] P T 8675 STX16 syntaxin 16 [Source:HGNC Symbol;Acc:11431] P T 64756 ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 [Source:HGNC Symbol;Acc:18803] T 23126 POGZ pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:18801] P T 29994 BAZ2B bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963] zzz999 50717 DCAF8 DDB1 and CUL4 associated factor 8 [Source:HGNC Symbol;Acc:24891] P T 27339 PRPF19 PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:17896] zzz999 6749 SSRP1 structure specific recognition protein 1 [Source:HGNC Symbol;Acc:11327] zzz999 7088 TLE1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) [Source:HGNC Symbol;Acc:11837] zzz999 4076 CAPRIN1 cell cycle associated protein 1 [Source:HGNC Symbol;Acc:6743] T 2804 GOLGB1 golgin B1 [Source:HGNC Symbol;Acc:4429] zzz999 4123 MAN2C1 mannosidase, alpha, class 2C, member 1 [Source:HGNC Symbol;Acc:6827] zzz999 5256 PHKA2 phosphorylase kinase, alpha 2 (liver) [Source:HGNC Symbol;Acc:8926] T 65110 UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) [Source:HGNC Symbol;Acc:20332] zzz999 57035 C1orf63 chromosome 1 open reading frame 63 [Source:HGNC Symbol;Acc:25234] zzz999 10868 USP20 ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:12619] zzz999 65010 SLC26A6 solute carrier family 26, member 6 [Source:HGNC Symbol;Acc:14472] zzz999 9962 SLC23A2 solute carrier family 23 (nucleobase transporters), member 2 [Source:HGNC Symbol;Acc:10973] T 6147 RPL23A ribosomal protein L23a [Source:HGNC Symbol;Acc:10317] zzz999 8295 TRRAP transformation/transcription domain-associated protein [Source:HGNC Symbol;Acc:12347] T 7919 DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:HGNC Symbol;Acc:13917] zzz999 7644 ZNF91 zinc finger protein 91 [Source:HGNC Symbol;Acc:13166] zzz999 2181 ACSL3 acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:3570] T 9270 ITGB1BP1 integrin beta 1 binding protein 1 [Source:HGNC Symbol;Acc:23927] zzz999

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